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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: brm
wikigenes
PDBj
CellType: Ovary
ATCC
MeSH
RIKEN BRC
SRX8512932
GSM4604902: WT-Ovary-Brm-ChIP; Drosophila melanogaster; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
brm
Cell type
Cell type Class
Adult
Cell type
Ovary
NA
NA
Attributes by original data submitter
Sample
source_name
Drosophila ovary
tissue
ovary
genotype/variation
WT
chip antibody
anti-Brm
provider/vender
gift from Susumu Hirose in NIG, Japan.
memo
10.1242/dev.083246
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA libraries were raised using NEBNext UltraⅡFS DNA Library Prep Kit (NEB) according to the manufacturer's instructions.
Sequencing Platform
instrument_model
Illumina MiSeq
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
1699806
Reads aligned (%)
100.0
Duplicates removed (%)
67.0
Number of peaks
1307 (qval < 1E-05)
dm3
Number of total reads
1699806
Reads aligned (%)
100.0
Duplicates removed (%)
66.8
Number of peaks
1419 (qval < 1E-05)
Base call quality data from
DBCLS SRA